Neelam Krishna, Shraddha Vishwakarma, Pramod Katara (2026). Deciphering Metabolite–MRGPRD interactions: A computational insight into RAS pathway modulation. Network Biology 16(3): 103-116. http://www.iaees.org/publications/journals/nb/articles/2026-16(3)/1-Katara-Abstract.asp
Neha Singh, Abhay Raj Kori, Pramod Katara (2026). Uncovering multi-target natural inhibitors for hypertension through network pharmacology and structure-based screening. Network Biology, 16(2): 31-48. http://www.iaees.org/publications/journals/nb/articles/2026-16(2)/1-Katara-Abstract.asp
Prithvi Singh, Asifa Khan, Mohammad Masood, Shivani Tyagi, Nitesh Shriwash, Bhupender Kumar, Pramod Katara, Mohammad Mahfuzul Haque & Ravins Dohare (2025) Molecular subtyping based on RYR2 correlates prognosis and tumor mutation burden in lung squamous cell carcinoma patients. Egypt J Med Hum Genet 26, 194 (2025). https://doi.org/10.1186/s43042-025-00816-2
Gyanendra Chaudhary, Aman Verma, Sarita Maurya, Reema Singh, Shivani Tyagi, Bappa Manna, Pramod Katara, Amit Prabhakar, Deepti Verma, and Awadh Bihari Yadav (2025). Design, Synthesis, and Biological Evaluation of Tetrahydropyridine Analogues as Potent Antibiofilm Agents against S. aureus: In Vitro and In Silico Studies. ACS Omega https://doi.org/10.1021/acsomega.5c05577
Dixit S, Srivastava M, Katara P (2024). In Silico and In Vitro Assessment of Virulent Proteins of Fusarium wilt in Tomato and Identification, Designing of New Trichoderma Compounds. Indian J Pharm Sci. 86(4):1499-1509. DOI: http://dx.doi.org/10.36468/pharmaceutical-sciences.1417
Krishna N, Vishwakarma S, Katara P (2024). Interaction profiling of cow milk metabolites against human Renin-Angiotensin System (RAS) proteins. Network Biology, 14(4): 293-304. http://www.iaees.org/publications/journals/nb/articles/2024-14(4)/3-Katara-Abstract.asp
Tyagi S, and Katara P (2024). Metatranscriptomics: A Tool for Clinical Metagenomics. Omics: A Journal of Integrative Biology. 28(8): 394-407. DOI: 10.1089/omi.2024.0130
Tyagi S, and Katara P (2024). A Metagenome- Wide Association Study of Gut Microbiome in Patients with AMD, ASD, RA, T2D & VKH diseases, Computational Biology and Chemistry, 110(2024) doi:https://doi.org/10.1016/j.compbiolchem.2024.108076
Krishna N, Tyagi S, Katara P (2024). Literature mining based profiling of angiotensin-converting enzyme 2. Network Biology, 14(2): 77-88. http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/3-Katara-Abstract.asp
Vishwakarma S, Krishna N, Katara P (2023). In silico identification and characterization of bovine mastitis related inflammatory genes and their possibilities to control mastitis, Network Biology, 13(4): 230-253. http://www.iaees.org/publications/journals/nb/articles/2023-13(4)/8-Katara-Abstract.asp
Yadav A, Srivastava S, Tyagi S, Krishna N, Katara P (2023). In-silico mining to glean SNPs of pharmaco-clinical importance: an investigation with reference to the Indian populated SNPs. In Silico Pharmacol. 11(1):17. https://doi.org/10.1007/s40203-023-00154-4
Pandey S, Maurya N, Awasthi H, Katara P, Singh S, Gautam B, Singh DB, (2023) Comprehensive analysis of non-synonymous SNPs related to Parkinson’s Disease and molecular dynamics simulation of PRKN mutants. Results in Chemistry, 100817 doi: https://doi.org/10.1016/j.rechem.2023.100817
Kumar S, Gupta M K, Gupta S K, Katara P (2022) Investigation of molecular interaction and conformational stability of disease concomitant to HLA-DRβ3. J Biomol Struct Dyn, 41(17):8417-8431 doi.org/10.1080/07391102.2022.2134211
Krishna N, Vishwakarma S, Katara P (2022) Identification and annotation of milk-associated genes from milk somatic cells using expression and RNA-seq data. Bioinformation 18(8): 703-709. DOI:10.6026/97320630018703
Mishra D, Mishra A, Katara P, Singh M P (2022) In silico identification of potential inhibitors of MPS1 from edible mushroom (Pleurotus ostreatus) to prevent aneuploidy and tumorigenesis. J Proteins Proteom 13:175–185 https://doi.org/10.1007/s42485-022-00091-4
Yadav A, Kesharwani A, Chaurasia D K, Katara P (2022) Mining of molecular insights of CYP2A6 and its variants complex with coumarin (CYP2A6*-coumarin) using molecular dynamics simulation, J Biomol Struct Dyn, April 16, 1-12. DOI: 10.1080/07391102.2022.2062785
Kumari R, Katara P (2021) Up regulated virulence genes in M. tuberculosis H37Rv gleaned from genome wide expression profiles, Bioinformation, 17(6): 608-615. DOI: 10.6026/97320630017608
Kesharwani A, Chaurasia DK, Katara P (2021) Repurposing of FDA approved drugs and their validation against potential drug targets for Salmonella enterica through molecular dynamics simulation, J Biomol Struct Dyn, 40(14):6255-6271. doi: 10.1080/07391102.2021.1880482
Srivastava S, Katara P (2020) Distribution of Indian population-specific transporter SNPs among Asians and their physiological consequences, Meta Gene, 26C; 100764, https://doi.org/10.1016/j.mgene.2020.100764
Verma Y, Yadav A, Katara P (2020) Mining of cancer core-genes and their protein interactome using expression profiling based PPI network approach, Gene Reports, 18, 100583, https://doi.org/10.1016/j.genrep.2019.100583
Pandey S, Dhusia K, Katara P, Singh S, Gautam B (2020) An in-silico analysis of deleterious single nucleotide polymorphisms and molecular dynamics simulation of disease linked mutations in genes responsible for neurodegenerative disorder, J Biomol Struct Dyn, 38(14): 4259-4272. doi: 10.1080/07391102.2019.1682047
Katara P, Yadav A (2019) Pharmacogenes (PGx-genes): Current understanding and future directions. Gene 718, 144050. https://doi.org/10.1016/j.gene.2019.144050
Sharma V, Singh V, Katara P (2019) Bioinformatics resources and approaches for the interaction of Oryza sativa and Magnaporthe Oryzae pathosystem. Int. J. Bioinformatics Research and Applications, 15(2), 91- 107.DOI: 10.1504/IJBRA.2019.099572
Dixit S, Srivastava M, Katara P (2019) 'Computational assessment of polymorphism with linkage disequilibrium and hotspots of recombination in pathogenic genes of Fusarium oxysporum f. sp. lycopersici'. Legume res. 42:856-861 doi: 10.18805/LR-461
Yadav A, Katara P (2018) 'In-silico mining of SNP-effects on structural properties of CYP2C9 and their consequences' International Conference on Bioinformatics and Systems Biology (BSB), Allahabad, 2018, pp. 136-140. DOI: 10.1109/BSB.2018.8770585
Singh V, Alam A, Katara P, Sharma V (2016) 'Co-Regulatory Genes of CEBiP: A Stress Responsive Gene for Rice Blast Infection'. MOJ Proteomics Bioinform 4(3): 00123. DOI:10.15406/mojpb.2016.04.00123
Singh V, Sharma V, Katara P (2016) 'Comparative transcriptomics of rice and exploitation of target genes for blast infection'. Agri Gene 1, 143-150 https://doi.org/10.1016/j.aggene.2016.08.004
Grover A, Singh S, Bhatt B B, Nasim M, Katara P (2016) 'Cross hybridization to Arabidopsis thaliana array reveals cold stress responsive genes in Lepidium latifolium', International Conference on Bioinformatics and Systems Biology (BSB), Allahabad, 2016, pp. 1-5. DOI: 10.1109/BSB.2016.7552120
Katara P, Kuntal H (2015) 'TPMT Polymorphism: When Shield Becomes Weakness'. Interdiscip Sci. 8 (2), 150-155 DOI: 10.1007/s12539-015-0111-1.
Katara P (2014) 'Single nucleotide polymorphism and its dynamics for pharmacogenomics'. Interdiscip Sci. 6 (2), 85-92. DOI: 10.1007/s12539-013-0007-x]
Katara P (2014) 'Potential of Bioinformatics as functional genomics tool: an overview'. Netw Model Anal Health Inform Bioinforma 3 (1), 1-7 doi: https://doi.org/10.1007/s13721-014-0052-3
Katara P (2013) 'Role of bioinformatics and pharmacogenomics in drug discovery and development process'. Netw Model Anal Health Inform Bioinforma 2 (4 ), 225-230 https://doi.org/10.1007/s13721- 013-0039-5
Gautam B, Katara P, A Choudhary, G Wadhwa, S Singh (2013) Prediction of miRNA targets affected proteins and their homologs in Mouse gammaherpesvirus68. International Journal of Bioinformatics and Biological Science 1 (1), 9-17.
Katara P, Grover A, Sharma V (2012) Phylogenetic footprinting: a boost for microbial regulatory genomics. Protoplasma 249 (4), 901-907. https://doi.org/10.1007/s00709-011-0351-9
Katara P, Grover A, Sharma V (2012) In silico prediction of drug targets in phytopathogenic Pseudomonas syringae pv. phaseolicola: charting a course for agrigenomics translation research. Omics: a journal of integrative biology 16 (12), 700-706. https://doi.org/10.1089/omi.2011.0141
Sharma V, Kuntal H, Katara P, Sharma S (2012) Identification of SSRs in EST sequences of Lolium and Agrostis species. International Journal of Integrative Biology, 2012. http://ijib.classicrus.com/trns/3811981567277373.pdf (ISSN: 0974-2816 )
Katara P, Grover A, Kuntal H, Sharma V (2011) In silico prediction of drug targets in Vibrio cholerae. Protoplasma 248 (4), 799-804. https://doi.org/10.1007/s00709-010-0255-0
Katara P, Gautam B, Kuntal H, Sharma V (2010) Prediction of miRNA targets, affected proteins and their homologs in Glycine max. Bioinformation 5 (4), 162. DOI: 10.6026/97320630005162
Gautam B, Katara P, Singh S, Farmer R (2010) Drug target identification using gene expression microarray data of Toxoplasma gondii. International Journal of Biometrics and Bioinformatics (IJBB) 4 (3), 113.
Katara P, Sharma N, Sharma S, Khatri I, Kaushik A, Kaushal A (2010) Comparative microarray data analysis for the expression of genes in the pathway of glioma. Bioinformation 5 (1), 31. DOI: 10.6026/97320630005031
Katara P, Sanghi N, Sharma V (2010). “IN SILICO ANALYSIS OF REGULATORY ELEMENTS OF ANTIBIOTIC PRODUCING GENES IN STREPTOMYCES SPECIES.” International Journal of Pharmaceutical Sciences Review and Research 4(3):99-103.