Comp-Omics Lab - Publications

Krishna N, Vishwakarma S, Katara P (2024). Interaction profiling of cow milk metabolites against human Renin-Angiotensin System (RAS) proteins. Network Biology, 14(4): 293-304. http://www.iaees.org/publications/journals/nb/articles/2024-14(4)/3-Katara-Abstract.asp
Tyagi S, and Katara P (2024). Metatranscriptomics: A Tool for Clinical Metagenomics. Omics: A Journal of Integrative Biology. 28(8): 394-407. DOI: 10.1089/omi.2024.0130
Tyagi S, and Katara P (2024). A Metagenome- Wide Association Study of Gut Microbiome in Patients with AMD, ASD, RA, T2D & VKH diseases, Computational Biology and Chemistry, 110(2024) doi:https://doi.org/10.1016/j.compbiolchem.2024.108076
Krishna N, Tyagi S, Katara P (2024). Literature mining based profiling of angiotensin-converting enzyme 2. Network Biology, 14(2): 77-88. http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/3-Katara-Abstract.asp
Vishwakarma S, Krishna N, Katara P (2023). In silico identification and characterization of bovine mastitis related inflammatory genes and their possibilities to control mastitis, Network Biology, 13(4): 230-253. http://www.iaees.org/publications/journals/nb/articles/2023-13(4)/8-Katara-Abstract.asp
Yadav A, Srivastava S, Tyagi S, Krishna N, Katara P (2023). In-silico mining to glean SNPs of pharmaco-clinical importance: an investigation with reference to the Indian populated SNPs. In Silico Pharmacol. 11(1):17. https://doi.org/10.1007/s40203-023-00154-4
Pandey S, Maurya N, Awasthi H, Katara P, Singh S, Gautam B, Singh DB, (2023) Comprehensive analysis of non-synonymous SNPs related to Parkinson’s Disease and molecular dynamics simulation of PRKN mutants. Results in Chemistry, 100817 doi: https://doi.org/10.1016/j.rechem.2023.100817
Kumar S, Gupta M K, Gupta S K, Katara P (2022) Investigation of molecular interaction and conformational stability of disease concomitant to HLA-DRβ3. J Biomol Struct Dyn, 41(17):8417-8431 doi.org/10.1080/07391102.2022.2134211
Krishna N, Vishwakarma S, Katara P (2022) Identification and annotation of milk-associated genes from milk somatic cells using expression and RNA-seq data. Bioinformation 18(8): 703-709. DOI:10.6026/97320630018703
Mishra D, Mishra A, Katara P, Singh M P (2022) In silico identification of potential inhibitors of MPS1 from edible mushroom (Pleurotus ostreatus) to prevent aneuploidy and tumorigenesis. J Proteins Proteom 13:175–185 https://doi.org/10.1007/s42485-022-00091-4
Yadav A, Kesharwani A, Chaurasia D K, Katara P (2022) Mining of molecular insights of CYP2A6 and its variants complex with coumarin (CYP2A6*-coumarin) using molecular dynamics simulation, J Biomol Struct Dyn, April 16, 1-12. DOI: 10.1080/07391102.2022.2062785
Kumari R, Katara P (2021) Up regulated virulence genes in M. tuberculosis H37Rv gleaned from genome wide expression profiles, Bioinformation, 17(6): 608-615. DOI: 10.6026/97320630017608
Kesharwani A, Chaurasia DK, Katara P (2021) Repurposing of FDA approved drugs and their validation against potential drug targets for Salmonella enterica through molecular dynamics simulation, J Biomol Struct Dyn, 40(14):6255-6271. doi: 10.1080/07391102.2021.1880482
Srivastava S, Katara P (2020) Distribution of Indian population-specific transporter SNPs among Asians and their physiological consequences, Meta Gene, 26C; 100764, https://doi.org/10.1016/j.mgene.2020.100764
Verma Y, Yadav A, Katara P (2020) Mining of cancer core-genes and their protein interactome using expression profiling based PPI network approach, Gene Reports, 18, 100583, https://doi.org/10.1016/j.genrep.2019.100583
Pandey S, Dhusia K, Katara P, Singh S, Gautam B (2020) An in-silico analysis of deleterious single nucleotide polymorphisms and molecular dynamics simulation of disease linked mutations in genes responsible for neurodegenerative disorder, J Biomol Struct Dyn, 38(14): 4259-4272. doi: 10.1080/07391102.2019.1682047
Katara P, Yadav A (2019) Pharmacogenes (PGx-genes): Current understanding and future directions. Gene 718, 144050. https://doi.org/10.1016/j.gene.2019.144050
Sharma V, Singh V, Katara P (2019) Bioinformatics resources and approaches for the interaction of Oryza sativa and Magnaporthe Oryzae pathosystem. Int. J. Bioinformatics Research and Applications, 15(2), 91- 107.DOI: 10.1504/IJBRA.2019.099572
Dixit S, Srivastava M, Katara P (2019) 'Computational assessment of polymorphism with linkage disequilibrium and hotspots of recombination in pathogenic genes of Fusarium oxysporum f. sp. lycopersici'. Legume res. 42:856-861 doi: 10.18805/LR-461
Yadav A, Katara P (2018) 'In-silico mining of SNP-effects on structural properties of CYP2C9 and their consequences' International Conference on Bioinformatics and Systems Biology (BSB), Allahabad, 2018, pp. 136-140. DOI: 10.1109/BSB.2018.8770585
Singh V, Alam A, Katara P, Sharma V (2016) 'Co-Regulatory Genes of CEBiP: A Stress Responsive Gene for Rice Blast Infection'. MOJ Proteomics Bioinform 4(3): 00123. DOI:10.15406/mojpb.2016.04.00123
Singh V, Sharma V, Katara P (2016) 'Comparative transcriptomics of rice and exploitation of target genes for blast infection'. Agri Gene 1, 143-150 https://doi.org/10.1016/j.aggene.2016.08.004
Grover A, Singh S, Bhatt B B, Nasim M, Katara P (2016) 'Cross hybridization to Arabidopsis thaliana array reveals cold stress responsive genes in Lepidium latifolium', International Conference on Bioinformatics and Systems Biology (BSB), Allahabad, 2016, pp. 1-5. DOI: 10.1109/BSB.2016.7552120
Katara P, Kuntal H (2015) 'TPMT Polymorphism: When Shield Becomes Weakness'. Interdiscip Sci. 8 (2), 150-155 DOI: 10.1007/s12539-015-0111-1.
Katara P (2014) 'Single nucleotide polymorphism and its dynamics for pharmacogenomics'. Interdiscip Sci. 6 (2), 85-92. DOI: 10.1007/s12539-013-0007-x]
Katara P (2014) 'Potential of Bioinformatics as functional genomics tool: an overview'. Netw Model Anal Health Inform Bioinforma 3 (1), 1-7 doi: https://doi.org/10.1007/s13721-014-0052-3
Katara P (2013) 'Role of bioinformatics and pharmacogenomics in drug discovery and development process'. Netw Model Anal Health Inform Bioinforma 2 (4 ), 225-230 https://doi.org/10.1007/s13721- 013-0039-5

Gautam B, Katara P, A Choudhary, G Wadhwa, S Singh (2013) Prediction of miRNA targets affected proteins and their homologs in Mouse gammaherpesvirus68. International Journal of Bioinformatics and Biological Science 1 (1), 9-17.
Katara P, Grover A, Sharma V (2012) Phylogenetic footprinting: a boost for microbial regulatory genomics. Protoplasma 249 (4), 901-907. https://doi.org/10.1007/s00709-011-0351-9
Katara P, Grover A, Sharma V (2012) In silico prediction of drug targets in phytopathogenic Pseudomonas syringae pv. phaseolicola: charting a course for agrigenomics translation research. Omics: a journal of integrative biology 16 (12), 700-706. https://doi.org/10.1089/omi.2011.0141
Sharma V, Kuntal H, Katara P, Sharma S (2012) Identification of SSRs in EST sequences of Lolium and Agrostis species. International Journal of Integrative Biology, 2012. http://ijib.classicrus.com/trns/3811981567277373.pdf (ISSN: 0974-2816 )
Katara P, Grover A, Kuntal H, Sharma V (2011) In silico prediction of drug targets in Vibrio cholerae. Protoplasma 248 (4), 799-804. https://doi.org/10.1007/s00709-010-0255-0
Katara P, Gautam B, Kuntal H, Sharma V (2010) Prediction of miRNA targets, affected proteins and their homologs in Glycine max. Bioinformation 5 (4), 162. DOI: 10.6026/97320630005162
Gautam B, Katara P, Singh S, Farmer R (2010) Drug target identification using gene expression microarray data of Toxoplasma gondii. International Journal of Biometrics and Bioinformatics (IJBB) 4 (3), 113.
Katara P, Sharma N, Sharma S, Khatri I, Kaushik A, Kaushal A (2010) Comparative microarray data analysis for the expression of genes in the pathway of glioma. Bioinformation 5 (1), 31. DOI: 10.6026/97320630005031
Katara P, Sanghi N, Sharma V (2010). “IN SILICO ANALYSIS OF REGULATORY ELEMENTS OF ANTIBIOTIC PRODUCING GENES IN STREPTOMYCES SPECIES.” International Journal of Pharmaceutical Sciences Review and Research 4(3):99-103.